PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678328516
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family DBB
Protein Properties Length: 306aa    MW: 34372.9 Da    PI: 6.5709
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678328516genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.42.5e-0764105439
   zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 
                  C+ +e+ +++  C  ++  lC +C +e H        H++
  678328516  64 IQCDVCEKAPATVICCADEAALCGKCDVEVHAAnklaskHQR 105
                57*****************************65667777765 PP

2zf-B_box284.5e-09114155237
   zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                + ++C+ ++ek + +fC +++ l+C+dC + +H+       H
  678328516 114 DLPRCDICQEKTAFIFCVEDRALFCKDCDEPIHSAnqraagH 155
                679******************************555566666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.6E-1261108IPR000315B-box-type zinc finger
PROSITE profilePS501199.18661108IPR000315B-box-type zinc finger
CDDcd000211.62E-664108No hitNo description
PfamPF006432.3E-564105IPR000315B-box-type zinc finger
PROSITE profilePS501198.944113160IPR000315B-box-type zinc finger
SMARTSM003362.1E-15113160IPR000315B-box-type zinc finger
PfamPF006431.9E-7114156IPR000315B-box-type zinc finger
CDDcd000217.95E-8116159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0048573Biological Processphotoperiodism, flowering
GO:0080167Biological Processresponse to karrikin
GO:0090351Biological Processseedling development
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003712Molecular Functiontranscription cofactor activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MIQRDHFTRF GPRKGRRLDR HRLLLHMRQS SATQSTILLI ASLAPSRGFG YWGPLLFGFW  60
EMKIQCDVCE KAPATVICCA DEAALCGKCD VEVHAANKLA SKHQRLLLQS LSNDLPRCDI  120
CQEKTAFIFC VEDRALFCKD CDEPIHSANQ RAAGHQRFLA TGIRVALSNG GSRCSDDTEK  180
NQQQQKPPKA QVPQQSGSSE ASLRQVPSFA PAVSWAVDDL LQLSDHDSCG KGQFDFNELE  240
WLNDIDFFNE QVPEKAVAAA EVPELRAYHT QSTSSYRQAK HYPVHKKPRI EILDDEEDMF  300
TVPDLG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091647.11e-107PREDICTED: B-box zinc finger protein 24
SwissprotQ962884e-91BBX24_ARATH; B-box zinc finger protein 24
TrEMBLA0A022REQ11e-106A0A022REQ1_ERYGU; Uncharacterized protein
STRINGVIT_05s0102g00750.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54102233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.11e-79DBB family protein